Université de Lorraine
Laboratoire Sols et Environnement
2, avenue de la Forêt de Haye
BP 20163
F-54505 Vandoeuvre-lès-Nancy cedex
Biomolecular and eco-physiological insights to breed the two ultimate European nickel phytomining crop
Phytoextraction are a friendly environmental approach to extract metal(loids) from soil either for mining (Phytomining) or farming for metal (Agromining) by using a group of specific plant. Hyperaccumulator species which are used for phytoextraction are still in wild status and do not harbour all the desirable traits also little is known about the genetics mechanism underlying nickel hyperaccumulation. Plant breeding is based on understanding the genetic mechanism of the trait that intended to be improved. Indeed, plant manipulation through pollination, crossing scheme, and selection of progeny can be started only after having deep knowledge on molecular mechanism. ‘Metal crops’ breeding are the promise alternative for efficient Agromining. Until now few studies were focused on its use in this field. This PhD study aim to bring more details on the physiological and molecular mechanism of nickel accumulation and start a breeding program of two ideal European candidate species Bornmuellera emarginata and B. tymphaea for Agromining.
To do so, firstly we will characterize phenotypically 14 accessions from Greece in term of biomass production, nickel uptake and accumulation. Secondly, we will use those genotypes selected after the reduction of heterozygosis by three generation of speed breeding to make the physiology study, pH range, co-cropping with Imperata cylindrica an iron hyperaccumulator.
And finally, we will identify genes which encode metal transporters in root, their loading in the xylem and sequestration in the vacuole by a comparative transcriptomic with closet non-accumulator Alyssoides utrilicata.
2020: Master of Integrative Biology and Physiology (BIP). Paris Diderot University, PARIS (France).
2017: Advanced Korean Language Certificate. Sunmoon University, Cheonan (South Korea (Republic of Korea)).
2016: Master of Plant Biology speciality Microbial and Plant Biotechnology. Cheikh Anta Diop University, Dakar (Senegal).
2012: Bachelor of Biology option Life Science. Cheikh Anta Diop University, Dakar (Senegal).
2020: Internship IJPB-INRAE, Versailles (France). Dr José Jimenez-Gomez. Identification of wild introgressions in the genome of cultivated tomato.
2019: Internship IRD, Montpellier (France). Dr Perla HAMON and Dr Romain GUYOT. De novo complete Cp genomes reconstruction for comparative genomics and phylogenetics in Rubiaceae.
2018: Laboratory worker. Pr Seo Yeong Won, Seoul (South Korea (Republic of Korea)). Drought Stress at seedling stage in Wheat at the Rural Development Administration. Korean Government Scholarship awarded.
2015: Agronomy technician. Dr Daniel FONCEKA, THIES (Senegal). Internship in the "Centre d'etudes Regional pour l'Amelioration de l'adaptation à la sécheresse" CERAAS.
Ly, S. N., Garavito, A., De Block, P., Asselman, P., Guyeux, C., Charr, J. C., ... & Guyot, R. (2020). Chloroplast genomes of Rubiaceae: Comparative genomics and molecular phylogeny in subfamily Ixoroideae. PloS one, 15(4), e0232295.
Guyeux, C., Garavito, A., Charr, J. C., Crouzillat, D., Descombes, P., LY, S. N., …&Guyot, R. Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNPs analyses, with particular attention to Coffea canephora (Robusta coffee), Molecular Phylogenetics and Evolution (2020)